Summer 1995. With the arrival of the "Age of Cats", the former Kerberos police unit is now disbanded. However one member remains, a stray dog who returns to his old roost after a three-years exile. This wild dog no longer has a master, but now the "Young Lady of Fate" will guide him on his journey.

A member of an elite paramilitary counter-terrorism unit becomes traumatized after witnessing the suicide bombing of a young girl and is forced to undergo retraining. However, unbeknownst to him, he becomes a key player in a dispute between rival police divisions, as he finds himself increasingly involved with the sister of the girl he saw die.

Cyborg detective Batou is assigned to investigate a series of murders committed by gynoids—doll-like cyborgs, which all malfunctioned, killed, then self-destructed afterwards. The brains of the gynoids initialize in order to protect their manufacturer's software, but in one gynoid, which Batou himself neutralized, one file remains: a voice speaking the phrase "Help me."

Part 1: "Time Knot: Reflection" Written by Kazunori Itô, directed by Tomomi Mochizuki. Mayu finds a camera floating in the ocean while on vacation. A very unusual camera. The film, mostly intact, reveals a picture of herself with a man she has never seen before. But that isn't the unusual part. This camera hasn't been made yet, and won't be made for another two years. Soon, Mayu finds herself swinging uncontrollably back and forth through time like a pendulum. Part 2: "Mystery Article File 538" Written and directed by Mamoru Oshii. This episode follows a down-on-his-luck detective who accepts the first case to come his way: Surveillance of a man and a little girl. But who are they? And why do airplanes that fly over them turn into giant imperial carp? An investigator's normal methods don't apply when reality itself no longer applies.

In the year 2029, Section 9, a group of cybernetically enhanced cops, are called in to investigate and stop a highly-wanted hacker known as 'The Puppetmaster'.

A mysterious suicide and a series of unmanned robot run-aways sparks off a Police investigation into the suspicious software on-board thousands of industrial robots around Tokyo.

Youngsters called Kildren, who are destined to live eternally in their adolescence. The Kildren are conscious that every day could be the last, because they fight a war as entertainment, organized and operated by adults. But as they embrace the reality they are faced with, they live their day-to-day lives to the full.

A Japanese police unit who use giant anthropomorphic robots (called Labors) is caught up in a political struggle between the civilian authorities and the military when a terrorist act is blamed on an Air Force jet. With the aid of a government agent, the team gets close to a terrorist leader to stop things from going out of control when after the military is impelled to impose martial law.

In the year 2029, the barriers of our world have been broken down by the net and by cybernetics, but this brings new vulnerability to humans in the form of brain-hacking. When a highly-wanted hacker known as 'The Puppetmaster' begins involving them in politics, Section 9, a group of cybernetically enhanced cops, are called in to investigate and stop the Puppetmaster.

In a near future, mankind has moved from a drained Earth to the Moon. Rebel acts of terrorism lead to conflicts with the Earth Federal Government. A mysterious entity called Dallos appears to restore hope.